Section: Dissemination

Promoting Scientific Activities

Scientific Events Organisation

Schools

• We organized SAMSON School 2017 in Lyon, for users and developers of SAMSON.

Member of the Organizing Committees

• Stephane Redon is a member of the steering committee of the Nanosciences Foundation in Grenoble

Scientific Events Selection

Member of the Conference Program Committees

Sergei Grudinin was an editorial member of the ACM–BCB'17 conference.

Reviewer

• Leonard Jaillet was a reviewer for ICRA (International Conference on Robotics and Automation), IROS (International Conference on Intelligent Robots and Systems), ISRR (International Symposium on Robotics Research) and for RA-L (Robotics and Automation Letters).

• Sergei Grudinin served as a reviewer at the ACM–BCB'17 conference.

Journal

Reviewer - Reviewing Activities

Sergei Grudinin served a reviewer for the following journals, several D3R assessment submissions in Journal of Computer–Aided Molecular Design; Bioinformatics, several CASP12 assessment submissions in PROTEINS: Structure, Function, and Bioinformatics; PLOS Computational Biology; PLoS One; Spectrochimica Acta Part A; Chemical Research in Toxicology; Journal of Computational Chemistry; The Journal of Physical Chemistry; Journal of Chemical Information and Modeling.

Invited Talks

• Sergei Grudinin gave an invited talk entitled "On the Nonlinear Normal Mode Analysis and its Applications to Structural Bioinformatics" at the Second International Conference on Computational Genomics and Proteomics, Aug 14 - 18 2017, Playa Blanca, Panama.

• Guillaume Pagès gave an invited talk entitled "Algorithms and Software for Symmetry Detection and Analysis in Large Macromolecular Assemblies" at the Second International Conference on Computational Genomics and Proteomics, Aug 14 - 18 2017, Playa Blanca, Panama.

• Sergei Grudinin gave an invited talk entitled "Some problems in computational electron–cryo microscopy" at the DROITE workshop on tomography: mathematics and applications, on the 27 Jan, 2017 in Grenoble.

• Sergei Grudinin gave an invited talk entitled "On the Nonlinear Normal Mode Analysis and its Applications to Structural Bioinformatics" at the rencontre nationales sur les modes normaux, May 30 2017, Institute Pasteur, Paris, France.

• Sergei Grudinin gave an invited talk entitled "Using machine learning and fast conformational space exploration techniques for some problems in structural bioinformatics" at the SMAI–2017 congres, June 4-9 2017, Azureva Ronce–les–Bains, France.

• Sergei Grudinin gave an invited talk entitled "Using Machine Learning and Integrative Approaches for Current Problems in Structural Biology" at the University Paris 6, Biologie Computationnelle et Quantitative lab on the 29th of May 2017.

• Sergei Grudinin gave an invited talk entitled "Application of machine learning to structural bioinformatics" on the 28th of February 2017 at the Thoth team of Inria Grenoble, France.

• Sergei Grudinin gave an invited talk entitled "Using Machine Learning and Integrative Approaches for Current Problems in Structural Biology" on the 14th of June 2017, at the ABS team of Inria Sophia-Antipolis, France.

• Sergei Grudinin gave an invited talk entitled "Using Machine Learning and Integrative Approaches for Current Problems in Structural Biology" at INRA Toulouse, France.

• Sergei Grudinin gave an invited talk entitled "On the Nonlinear Normal Mode Analysis and its Applications to Structural Biology" at LAAS CNRS, Toulouse, France.

• Sergei Grudinin gave an invited talk entitled "On the Nonlinear Normal Mode Analysis and its Applications to Structural Biology Including SAXS and Cryo-EM Experiments" at IBT Vilnius, Lithuania, on the 15th of September 2017.

• Sergei Grudinin gave an invited talk entitled "On some aspects of computational predictions of protein structure and organization" at the Institute of Bioorganic Chemistry NASB, Minsk, Belarus, on the 19th of September 2017.

• Sergei Grudinin gave an invited talk entitled "On some aspects of computational predictions of protein structure and organization" at the Interdisciplinary Laboratory Of Biological Systems Modelling, Warsaw, Poland, on the 9th of October 2017.

• Sergei Grudinin gave an invited talk entitled "Computational predictions of protein structure and organization" at the Laboratory For Biomolecular Modeling, EPFL, Lausanne, Switzerland, on the 24th of October 2017.

• Sergei Grudinin gave an invited talk entitled "On some methods for structural bioinformatics" at the Methodes Algorithmiques pour les Structures et Interactions des Macromolecules (GT MASIM) meeting on Nov. 16-17, Paris, France.

• Alexandre Hoffmann gave an invited talk entitled "On fast Fourier transform (FFT)-accelerated flexible exhaustive search for cryo-EM fitting" at the CryoEM Structure Challenges Workshop, Oct 6-8, Stanford, USA,

Other Talks, Presentations and Participations in the Scientific Events

• Sergei Grudinin gave a talk entitled "On the non–linear normal mode analysis and its applications" at the GGMM 2017 conference, May 9-11 2017, Reims, France.

• Guillaume Pagès, Sergei Grudinin, Alexandre Hoffmann, and Maria Kadukova presented 3 posters at the GGMM 2017 conference, May 9-11 2017, Reims, France.

• Sergei Grudinin participated in the Journees Scientifiques Inria 2017, Jun 14-16 2017, Antibes, France.

• Sergei Grudinin and Alexandre Hofmann gave a talk entitled "FFT–accelerated exhaustive flexible docking method" at the Mapping2017 conference, May 21-26 2017, Lyon, France.

• Sergei Grudinin, Guillaume Pagès, Alexandre Hoffmann, and, Maria Kadukova presented two posters at the Mapping2017 conference, May 21-26 2017, Lyon, France.

• Sergei Grudinin and Yassine Naimi gave a talk entitled "On the Small–angle X–ray Scattering modeling in SAMSON" at the SAMSON School 2017, Lyon, France.

• Sergei Grudinin gave a talk entitled "On the development of knowledge–based approaches for structural predictions of macromolecules in Nano–D team" at the seminaire d'evaluation Nano–D, Apr 15-16 2017, Paris, France.

• Sergei Grudinin gave a talk entitled "Using Machine Learning for Protein-Ligand Interactions" at the SBDD2017 conference, Sep 4-8 2017, Lausanne, Switzerland.

• Sergei Grudinin presented a poster entitled "On the Normal Modes, Small-Angle Scattering and Convex Optimization for Protein Structure Prediction" at the Coarse-graining of biomolecules and beyond workshop, on the 7th of October 2017, Warsaw, Poland.